The best payroll software in India isn’t just about making salary calculations anymore.
In 2025, HR professionals have to go through labour compliances, accurate taxation, and salary audits, all of which can be tiresome and mundane.
As a result, they often find themselves staying up late, collecting and cross-checking payroll data from endless Excel sheets
But, you don’t have to struggle when there is software that automates all payroll tasks.
But where do you find out the exact tool for your business? Let us help you with our list of 15 top payroll software in India to take your shortlisting headache out.
To make the list authentic and reliable:
- We analysed 200+ real user reviews from leading software review sites.
- We also explored each provider’s website, studied what they offer, and watched their demo videos.
- While studying each software, we paid special attention to how rich their features are and how intuitive their dashboards feel.
Get ready to discover the most forward-thinking payroll software providers in India.
Let’s dive in!
Best 15 Payroll Software in India Summary List
- NYGGS – for corporates and heavy industries like construction and mining.
- RazorpayX Payroll – for modern businesses with contractors and freelancers.
- factoHR – for field teams and companies managing remote staff.
- Kredily – for startups and small teams looking for a free, fast payroll setup.
- SumHR – for cloud-first SMEs that want flexibility and simplicity.
- Pocket HRMS – for businesses that want AI + payroll accuracy.
- Superworks – for fast-growing startups wanting AI-powered speed.
- Qandle – for mid-sized firms ready to scale payroll across multiple locations.
- Zimyo – for HR teams that want simple, accurate, and fast payroll.
- Quikchex – for HR managers managing complex payroll structures.
- greytHR – for established mid-sized companies that value reliability.
- Keka – for large companies managing payroll across multiple departments or locations.
- HROne – for multi-location organisations with heavy compliance requirements.
- Zoho Payroll – for enterprises that love integrated ecosystems.
- Darwinbox – for global enterprises managing complex payroll structures.
Flexible Payroll Software in India
1. NYGGS Payroll
Most payroll software is built for offices. NYGGS goes beyond that. It’s built for offices as well as heavy industries like construction, manufacturing and mining. NYGGS payroll has enterprise-grade features, modules and security and comes with the entire HRMS software ecosystem. With its power of AI, where project-linked pay, set & forget salary structures, and statutory compliances like PF, TDS, LWF, and gratuity are all impressive features. Besides that, it comes with a minimalist dashboard, multiple filters for easy access, and downloadable reports about payroll history and trends that keep HR and payroll teams always updated.
Reasons it is in this list:
- PF, PT, TDS, and ESIC compliance modules
- Automated salary & benefit deductions
- Loan, advance, and EMI tracking
- Built-in AI chatbot for support
NYGGS payroll is the best choice for flexibility, customisability, and reliability.
2. RazorpayX Payroll
RazorpayX Payroll brings fintech precision to HR. It lets you pay full-time staff, freelancers, and contractors in one dashboard — while automating tax filing and compliance.
Reasons it is in this list:
- Pay full-time, contract, and freelance employees.
- One-click compliance filing (TDS, PF, PT, ESIC)
- Real-time alerts for regulatory changes
- 45+ HRMS & attendance integrations
This internet-based payroll software is ideal for startups, agencies, and gig-driven companies.
3. factoHR Payroll
factoHR is what happens when payroll meets mobility. With GPS-based attendance, mobile ESS, and bilingual payslips, it’s perfect for companies managing field teams across India.
Reasons it is in this list:
- GPS-based attendance integrated with payroll
- Mobile ESS for pay and tax visibility
- Tax regime selection (old/new) with projections
- Payslips in vernacular language
factoHR provides the best payroll software for service, logistics, or retail companies with distributed teams.
Best Payroll Software in India for Startups & SMEs
4. Kredily
Most startups delay payroll automation, thinking they’re “too small” for it. However, Kredily flips that logic. It’s a free, cloud-based payroll platform that automates everything—from salary slips to PF filings—so you can stay compliant and pay your team on time, every time.
Reasons it is in this list:
- Free forever plan with 15-minute activation
- Integrated compliance features (PF, TDS, ESI, PT)
- overtime, variable, and performance-based bonus payouts
- AI-powered “Magic Upload” for instant data import
The free version is ideal for bootstrapped startups that want compliant payroll without paying a rupee.
5. SumHR
SumHR is cloud-based payroll management software that brings automation, flexibility, and accuracy together. Moreover, it handles everything from payroll calculation and TDS to leave deductions, arrears, and full-and-final settlements.
Reasons it is in this list:
- Cloud-based, stress-free payroll
- Unlimited salary components
- Proof-submission workflow for tax declarations
- Full & final settlement automation
This flexible payroll software is ideal for SMBs which are tired of manual payroll chaos and Excel templates.
6. Pocket HRMS
Imagine payroll that fixes its own errors. Pocket HRMS does that. Its smHRt Payroll engine uses machine learning to catch mistakes before they happen — while keeping your data safe on Microsoft Azure’s encrypted cloud.
Reasons it is in this list:
- Machine Learning–powered “smHRt Payroll” for error detection
- Hosted on Microsoft Azure (256-bit encryption)
- Timesheet and project integration
- Multi-schedule payroll (hourly, contract, full-time)
This software is ideal for tech-savvy teams that want smart payroll with deep insights.
7. Superworks
Unlike traditional tools, Superworks believes payroll shouldn’t take hours — or even half an hour. With its AI-driven Super Payroll, you can process salaries, bonuses, and advances in just four clicks. Fast, automated, and scalable — exactly what growing startups need.
Reasons it is in this list:
- 4-click salary disbursement
- AI-powered Super Payroll for automation
- Loan, bonus, and advance management built-in
- 60,000+ active users across 15+ industries
This Super Payroll is an ideal fit for founders who want to run payroll “the startup way” — fast and automated.
Also Read: Top 15 Best HRMS Software In India (2026)
Best Payroll Software in India for Mid-Sized Companies
8. Qandle
Payroll for 50 people is easy. Payroll for 5,000? Not so much. Qandle scales beautifully in that middle ground. It automates compliance, deductions, and disbursements without overwhelming payroll teams. Plus, its reporting & analytics tools are so powerful that you have all the payroll information visually presented and readily available to export.
Reasons it is in this list:
- Handles 10 to 10,000 employees
- Automated compliance (PF, ESI, LWF, PT)
- Direct bank transfer integration
- 80% admin workload reduction via ESS
Qandle is suitable for growing businesses that need accuracy and scalability without complexity.
9. Zimyo
Payroll errors kill employee trust. Zimyo solves that with a clean, 5-click payroll process that syncs directly with attendance, leave, and biometric data. No delays. No mismatched numbers. Just accuracy.
Reasons it is in this list:
- Payroll in just 5 clicks
- Built-in attendance and biometric integration
- Automated PF, ESIC, and TDS filings
- Custom workflows and access control
Mid-size firms love the value, speed and transparency in payouts Zimyo provides.
10. Quikchex
Quikchex is for HR managers who crave control and simplicity. From loan management to flexi-benefits, everything runs through one connected system that drastically cuts payroll time from 7 days to just 1 day. Additionally, it supports diverse compensation models, includes no complex features, offers auto-generated bank reports for disbursements, as well as provides reconciliation support.
Reasons it is in this list:
- Custom salary templates and flexi-benefit design
- Automated tax, PF, and ESIC compliance
- GPS-based attendance integration
- Loan management and auto-deductions
- Custom payslip templates with company branding
Ideal for mid-sized organisations that need deep payroll and compliance control and simple loan and advance management tools.
11. greytHR
greytHR has been around longer than most payroll startups combined — and it shows. With 23,000+ clients, it’s battle-tested for Indian compliance, accurate disbursements, and real-time reporting. Its UI stands out among others – easy, engaging and minimalist.
Reasons it is in this list:
- Used by 23,000+ companies in 250+ cities
- 100% statutory compliance
- PayNow for instant salary transfers
- The ESS portal is reducing admin work by 80%
This trusted, tested payroll software is ideal for companies that prioritise compliance and proven performance.
Top Payroll Software in India for Enterprises
12. Keka
Keka doesn’t just calculate payroll—it orchestrates it. When you Google “the best payroll software in India”, most probably you will find it on the first page. This is because Keka is one of the leading HRMS software providers in India. With audit-ready reports, multi-entity compliance, and deep ERP integrations, it handles everything from arrears to scenario planning at enterprise scale.
Reasons it is in this list:
- Trusted by 10,000+ companies
- Handles 10–10,000 employees seamlessly
- Pre-built integrations (Tally, SAP, QuickBooks, Zoho)
- Multi-entity payroll with scenario planning and forecasting
Keka is for the enterprises needing not just payroll but the entire HRMS software system.
13. HROne
When you’re running payroll across 40+ locations, spreadsheets won’t cut it. HROne brings AI, analytics, and automation together to simplify compliance-heavy, multi-state payroll operations. Its name also suggests that the HROne provides software for automating the entire HRMS ecosystem, not just payroll.
Reasons it is in this list:
- Multi-state compliance across 40+ locations
- AI-powered voice assistant for HR operations
- Deep ERP integrations (SAP, Oracle, Tally)
- 3D payroll analytics & salary comparison reports
It is ideal for enterprises juggling multiple paygroups and entities.
14. Zoho Payroll
Zoho Payroll feels like payroll built for precision. It scales effortlessly, automates compliance in 28 states, and integrates with Zoho’s entire ecosystem — making it a no-brainer for teams already using Zoho Books or People.
Reasons it is in this list:
- 40+ real-time reports and multi-level approvals
- 21 comprehensive payroll and compliance features
- Native integration with the Zoho suite and external ERPs
- PF, ESI, LWF, and IT compliance across 28 states
This is the best payroll software for businesses using Zoho Books, People, or CRM already.
15. Darwinbox
Our research identified Darwinbox as a full enterprise HRMS engine. And its payroll module is commendable. With real-time data sync, multi-currency support, and Gartner recognition, it handles complex, multi-country payroll like a pro.
Reasons it is in this list:
- 100% digitised, audit-ready payroll
- Multi-country & multi-currency support
- Unified HR + payroll + finance platform
- Recognised in Gartner’s Magic Quadrant (2025)
Darwinbox is the best fit for enterprise HR leaders who demand accuracy, compliance (Indian + global), and control.
How to Choose One?
Each payroll software in this list solves a different pain point from AI-based automation (Pocket HRMS, Superworks) to automatic compliance (NYGGS Payroll Software, Razorpay).
The key?
Don’t chase features.
Choose the one that matches your business size, team complexity, and compliance load.
Because when payroll runs smoothly, your business does too.